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RAD-ANNOUNCEMENTS  January 2025

RAD-ANNOUNCEMENTS January 2025

Subject:

RADtool daily hits

From:

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Date:

Wed, 22 Jan 2025 11:18:36 -0500

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text/plain (76 lines)

RADTOOL DAILY CHECK RESULTS

This is an automated message generated by the RADtool server. Every day, the RCSB database is checked for any structures that contain long RNA chains. Below is a list of automatically-analyzed structures that were checked today. The RCSB IDs are given, as well as their initial designation (LSU-SSU, SSU only, LSU only, or unclassified). These are preliminary assignments. Each hit is manually verified before being added to the RAD database webpage at radtool.org. 

SUMMARY
25 RCSB IDs were checked. 0 did not appear to contain a ribosome.
There were 0 IDs for which downloading the structures failed.


TOTALS
LSUSSU: 1562 structures before and 1562 after checking
SSU   : 438 structures before and 438 after checking
LSU   : 579 structures before and 604 after checking

*********************************************************

NEW RIBOSOMES FOUND FOR THE FOLLOWING IDS

*********************************************************

Complete LSUSSU assemblies
none

Structures with only an SSU
none

Structures with only an LSU
9d89
9h3k
9h3l
9h3m
9h3n
9h3o
9h3p
9h3q
9h3r
9h3s
9h3t
9h3u
9h3v
9h3w
9h3y
9h3z
9ha1
9ha2
9ha3
9ha5
9ha6
9ha7
9hai
9hal
9ham


*********************************************************

STRUCTURES WITH LARGE RNA FRAGMENTS FOR WHICH RADTOOL
WAS UNABLE TO IDENTIFY A RIBOSOMAL SUBUNIT

*********************************************************

Structures that were downloaded but not found to have 
a ribosome. These may be partially assembled ribosomes,
or non-ribosomal systems.
none

Structures downloaded in cif format that were not found
to contain a ribosome. This is uncommon, but cif files 
are sometimes incompatible with VMD. 
none

########################################################################

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