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RAD-ANNOUNCEMENTS  March 2025

RAD-ANNOUNCEMENTS March 2025

Subject:

RADtool daily hits

From:

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Date:

Wed, 19 Mar 2025 11:39:37 -0400

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text/plain (73 lines)

RADTOOL DAILY CHECK RESULTS

This is an automated message generated by the RADtool server. Every day, the RCSB database is checked for any structures that contain long RNA chains. Below is a list of automatically-analyzed structures that were checked today. The RCSB IDs are given, as well as their initial designation (LSU-SSU, SSU only, LSU only, or unclassified). These are preliminary assignments. Each hit is manually verified before being added to the RAD database webpage at radtool.org. 

SUMMARY
24 RCSB IDs were checked. 8 did not appear to contain a ribosome.
There were 0 IDs for which downloading the structures failed.


TOTALS
LSUSSU: 1571 structures before and 1584 after checking
SSU   : 445 structures before and 450 after checking
LSU   : 612 structures before and 612 after checking

*********************************************************

NEW RIBOSOMES FOUND FOR THE FOLLOWING IDS

*********************************************************

Complete LSUSSU assemblies
8ztu
8ztv
9b0f
9b0h
9b0p
9b0q
9b0r
9b0s
9j1m
9n2b
9n2c

Structures with only an SSU
8yp6
9b0g
9fco
9fda
9g06

Structures with only an LSU
none


*********************************************************

STRUCTURES WITH LARGE RNA FRAGMENTS FOR WHICH RADTOOL
WAS UNABLE TO IDENTIFY A RIBOSOMAL SUBUNIT

*********************************************************

Structures that were downloaded but not found to have 
a ribosome. These may be partially assembled ribosomes,
or non-ribosomal systems.
9fib
9isv
9j3r
9j3t
9j6y
9l0r
9lcr
9lmf

Structures downloaded in cif format that were not found
to contain a ribosome. This is uncommon, but cif files 
are sometimes incompatible with VMD. 
 9fib

########################################################################

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