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RAD-ANNOUNCEMENTS  November 2024

RAD-ANNOUNCEMENTS November 2024

Subject:

RADtool daily hits

From:

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Date:

Wed, 20 Nov 2024 11:16:23 -0500

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text/plain (74 lines)

RADTOOL DAILY CHECK RESULTS

This is an automated message generated by the RADtool server. Every day, the RCSB database is checked for any structures that contain long RNA chains. Below is a list of automatically-analyzed structures that were checked today. The RCSB IDs are given, as well as their initial designation (LSU-SSU, SSU only, LSU only, or unclassified). These are preliminary assignments. Each hit is manually verified before being added to the RAD database webpage at radtool.org. 

SUMMARY
25 RCSB IDs were checked. 0 did not appear to contain a ribosome.
There were 0 IDs for which downloading the structures failed.


TOTALS
LSUSSU: 1525 structures before and 1541 after checking
SSU   : 413 structures before and 424 after checking
LSU   : 572 structures before and 574 after checking

*********************************************************

NEW RIBOSOMES FOUND FOR THE FOLLOWING IDS

*********************************************************

Complete LSUSSU assemblies
8p7x
8p7y
8p8v
8p8w
8ukb
9d0j
9dfc
9dfd
9dfe
9e71
9e7f
9gr1

Structures with only an SSU
8p6p
8xp2
8xp3
9gup
9guq
9gus
9gut
9guu
9guv
9guw
9gux

Structures with only an LSU
8p8b
9e6q


*********************************************************

STRUCTURES WITH LARGE RNA FRAGMENTS FOR WHICH RADTOOL
WAS UNABLE TO IDENTIFY A RIBOSOMAL SUBUNIT

*********************************************************

Structures that were downloaded but not found to have 
a ribosome. These may be partially assembled ribosomes,
or non-ribosomal systems.
none

Structures downloaded in cif format that were not found
to contain a ribosome. This is uncommon, but cif files 
are sometimes incompatible with VMD. 
none

########################################################################

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