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RAD-ANNOUNCEMENTS  May 2024

RAD-ANNOUNCEMENTS May 2024

Subject:

RADtool daily hits

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Date:

Wed, 1 May 2024 11:19:15 -0400

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text/plain (60 lines)

RADTOOL DAILY CHECK RESULTS

This is an automated message generated by the RADtool server. Every day, the RCSB database is checked for any structures that contain long RNA chains. Below is a list of automatically-analyzed structures that were checked today. The RCSB IDs are given, as well as their initial designation (LSU-SSU, SSU only, LSU only, or unclassified). These are preliminary assignments. Each hit is manually verified before being added to the RAD database webpage at radtool.org. 

SUMMARY
12 RCSB IDs were checked. 1 did not appear to contain a ribosome.
There were 0 IDs for which downloading the structures failed.


TOTALS
LSUSSU: 1413 structures before and 1418 after checking
SSU   : 383 structures before and 386 after checking
LSU   : 541 structures before and 544 after checking

*********************************************************

NEW RIBOSOMES FOUND FOR THE FOLLOWING IDS

*********************************************************

Complete LSUSSU assemblies
8p2f
8p2g
8p2h
8vs9
8vsa

Structures with only an SSU
8xxl
8xxm
8xxn

Structures with only an LSU
8v83
8v84
8v87


*********************************************************

STRUCTURES WITH LARGE RNA FRAGMENTS FOR WHICH RADTOOL
WAS UNABLE TO IDENTIFY A RIBOSOMAL SUBUNIT

*********************************************************

Structures that were downloaded but not found to have 
a ribosome. These may be partially assembled ribosomes,
or non-ribosomal systems.
8k0s

Structures downloaded in cif format that were not found
to contain a ribosome. This is uncommon, but cif files 
are sometimes incompatible with VMD. 
none

########################################################################

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