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RAD-ANNOUNCEMENTS  January 2024

RAD-ANNOUNCEMENTS January 2024

Subject:

RADtool daily hits

From:

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Date:

Wed, 24 Jan 2024 11:23:21 -0500

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text/plain (54 lines)

RADTOOL DAILY CHECK RESULTS

This is an automated message generated by the RADtool server. Every day, the RCSB database is checked for any structures that contain long RNA chains. Below is a list of automatically-analyzed structures that were checked today. The RCSB IDs are given, as well as their initial designation (LSU-SSU, SSU only, LSU only, or unclassified). These are preliminary assignments. Each hit is manually verified before being added to the RAD database webpage at radtool.org. 

SUMMARY
6 RCSB IDs were checked. 1 did not appear to contain a ribosome.
There were 0 IDs for which downloading the structures failed.


TOTALS
LSUSSU: 1363 structures before and 1364 after checking
SSU   : 368 structures before and 369 after checking
LSU   : 526 structures before and 529 after checking

*********************************************************

NEW RIBOSOMES FOUND FOR THE FOLLOWING IDS

*********************************************************

Complete LSUSSU assemblies
8cd1

Structures with only an SSU
8fvy

Structures with only an LSU
8rjb
8rjc
8rjd


*********************************************************

STRUCTURES WITH LARGE RNA FRAGMENTS FOR WHICH RADTOOL
WAS UNABLE TO IDENTIFY A RIBOSOMAL SUBUNIT

*********************************************************

Structures that were downloaded but not found to have 
a ribosome. These may be partially assembled ribosomes,
or non-ribosomal systems.
8jsh

Structures downloaded in cif format that were not found
to contain a ribosome. This is uncommon, but cif files 
are sometimes incompatible with VMD. 
 8jsh

########################################################################

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