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RAD-ANNOUNCEMENTS  March 2023

RAD-ANNOUNCEMENTS March 2023

Subject:

RADtool daily hits

From:

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Date:

Thu, 9 Mar 2023 11:12:09 -0500

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text/plain (61 lines)

RADTOOL DAILY CHECK RESULTS

This is an automated message generated by the RADtool server. Every day, the RCSB database is checked for any structures that contain long RNA chains. Below is a list of automatically-analyzed structures that were checked today. The RCSB IDs are given, as well as their initial designation (LSU-SSU, SSU only, LSU only, or unclassified). These are preliminary assignments. Each hit is manually verified before being added to the RAD database webpage at radtool.org.

SUMMARY
11 RCSB IDs were checked. 0 did not appear to contain a ribosome.
There were 0 IDs for which downloading the structures failed.


TOTALS
LSUSSU: 1223 structures before and 1225 after checking
SSU : 340 structures before and 340 after checking
LSU : 407 structures before and 416 after checking

*********************************************************

NEW RIBOSOMES FOUND FOR THE FOLLOWING IDS

*********************************************************

Complete LSUSSU assemblies
8akn
8am9

Structures with only an SSU
none

Structures with only an LSU
8a3d
8aaf
8agt
8agu
8agv
8agw
8agx
8agz
8ana


*********************************************************

STRUCTURES WITH LARGE RNA FRAGMENTS FOR WHICH RADTOOL
WAS UNABLE TO IDENTIFY A RIBOSOMAL SUBUNIT

*********************************************************

Structures that were downloaded but not found to have
a ribosome. These may be partially assembled ribosomes,
or non-ribosomal systems.
none

Structures downloaded in cif format that were not found
to contain a ribosome. This is uncommon, but cif files
are sometimes incompatible with VMD.
none

########################################################################

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