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RAD-ANNOUNCEMENTS  February 2024

RAD-ANNOUNCEMENTS February 2024

Subject:

RADtool daily hits

From:

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Date:

Wed, 21 Feb 2024 11:17:49 -0500

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text/plain (67 lines)

RADTOOL DAILY CHECK RESULTS

This is an automated message generated by the RADtool server. Every day, the RCSB database is checked for any structures that contain long RNA chains. Below is a list of automatically-analyzed structures that were checked today. The RCSB IDs are given, as well as their initial designation (LSU-SSU, SSU only, LSU only, or unclassified). These are preliminary assignments. Each hit is manually verified before being added to the RAD database webpage at radtool.org.

SUMMARY
19 RCSB IDs were checked. 2 did not appear to contain a ribosome.
There were 0 IDs for which downloading the structures failed.


TOTALS
LSUSSU: 1374 structures before and 1387 after checking
SSU : 372 structures before and 374 after checking
LSU : 530 structures before and 535 after checking

*********************************************************

NEW RIBOSOMES FOUND FOR THE FOLLOWING IDS

*********************************************************

Complete LSUSSU assemblies
8ip8
8ipa
8ipb
8oo0
8rd8
8rdv
8rdw
8ud6
8ud7
8ud8

Structures with only an SSU
8ip9
8jsg

Structures with only an LSU
8ohd
8oj0
8oj5
8oj8
8qfd


*********************************************************

STRUCTURES WITH LARGE RNA FRAGMENTS FOR WHICH RADTOOL
WAS UNABLE TO IDENTIFY A RIBOSOMAL SUBUNIT

*********************************************************

Structures that were downloaded but not found to have
a ribosome. These may be partially assembled ribosomes,
or non-ribosomal systems.
8ony
8onz

Structures downloaded in cif format that were not found
to contain a ribosome. This is uncommon, but cif files
are sometimes incompatible with VMD.
none

########################################################################

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