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Hello RCN!


The MarineOmics working group is organizing a virtual hack-a-thon Dec.
13-15 to develop content for the website marineomics.io
<https://marineomics.github.io/>, and we’re looking for participants!
Formed through the Research Coordination Network for Evolution in Changing
Seas <https://rcn-ecs.github.io/> (RCN-ECS), the working group synthesizes
and disseminates tutorials, reproducibility tools, and best principles for
ecological genomic research in marine and nonmodel systems. You can learn
more about the MarineOmics working group and website through our recent
publication
<https://besjournals.onlinelibrary.wiley.com/doi/full/10.1111/2041-210X.14219>
.

The hackathon will take place Dec. 13-15, with 4 hours of scheduled time
each day during the hours of 12pm-4pm EST (with breaks built in)
Participants can be anyone with experience, or who is interested in gaining
experience, using ecological ‘omics methods at the undergraduate, graduate,
postdoctoral, research scientist, or faculty level. Previous participation
in MarineOmics activities is not required. While attendance can be
flexible, we’d prefer that participants are able to attend at least 8 hours
over the course of the hackathon. $500 stipends are available to
participating students and postdocs and can be requested using the hackathon
registration form
<https://docs.google.com/forms/d/e/1FAIpQLSe7NftmXd_IaeAganNilw5_kHA9y5XQC0IWYhUrrdq2MEfSug/viewform?usp=sf_link>
(see eligibility requirements below).

Participants will have the opportunity to collaborate in small groups or
work independently to develop content for the MarineOmics website. This can
include new webpages or webpages that are currently in development and
could be finished with a focused hackathon effort. Content topics can
expand on existing topics on the website (population genomics, RNAseq for
differential expression, genome-phenome mapping), or cover new topics. We
are particularly interested in content that involves genome assembly,
genome annotation, metabarcoding, epigenetics, quantitative comparisons of
different data types, and developing automated workflows (i.e. Snakemake
and Nextflow). However, if you have an idea for another topic that involves
‘omics methods applied to nonmodel taxa, feel free to bring it!

To sign up for the hackathon, please fill out the attached Google Form
<https://docs.google.com/forms/d/e/1FAIpQLSe7NftmXd_IaeAganNilw5_kHA9y5XQC0IWYhUrrdq2MEfSug/viewform?usp=sf_link>.
The deadline to sign up is Nov. 27. If you have any questions, please
direct them to Katherine Silliman ([log in to unmask]).


Stipend Eligibility

For those interested in receiving a stipend, we welcome and encourage
stipend applications from anyone at the undergraduate, graduate, or
postdoctoral (< 5 years post-PhD) level, regardless of previous MarineOmics
participation or demographic information. However, stipend recipients must
have a SSN or Tax ID Number in the USA per NSF regulations. Stipend
recipients are required to attend at least 8 hours of the hackathon.

In the case of more stipend applications than funding availability,
stipends will be prioritized for:

   -

   Participants who have not yet received a stipend through the MarineOmics
   group
   -

   Participants who suggest developing a webpage on a new topic

Stipends can only be paid to persons with a SSN or Tax ID Number in the
USA. For international students in the US, please consult with the
international office of your university before receiving the payment. There
is usually additional paperwork that has to be filled out when receiving
funds from another institution.


Best,


Katherine Silliman, Sam Bogan, and Jason Johns


--
Katherine Silliman, Ph.D.
Research Scientist
Northern Gulf Institute, Mississippi State University
Atlantic Oceanographic and Meteorological Laboratory (AOML)
National Oceanic and Atmospheric Administration (NOAA)
4301 Rickenbacker Cswy, Miami, FL 33149
Office: (305) 361-4324
Work cell: (786) 505-2780
https://www.aoml.noaa.gov/omics

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