Happy New Year, Everyone!
In the past 2017, Research Computing installed a collection of software packages and libraries on Discovery Cluster to support advanced computing activities across multiple disciplines.
The following is a list of newly installed software packages and libraries from March to December 2017.
New software and libraries installed as new modules:
1) 32-bit GLIBC for all compute nodes
2) afni-17.1.11 (Analysis of Functional NeuroImages)
3) amber16-cuda: compiling with cuda-7.5
4) amber16-mpi: compiling with mpich-3.0.4
5) ansys-fluent-18
6) boost-1.63.0
7) cantera-2.3.0
8) CGAL-4.9.1
9) cmake-3.10.0
10) cuda-7.5 drivers (on computing nodes)
11) cuda-8.0 toolkits and drivers (on computing nodes)
12) espresso-4.1.3
13) fmt-4.0.0
14) gamess-2017R1 (GAMESS, General Atomic and Molecular Electronic Structure System)
15) gdbm-1.13
16) gromacs-5.1.4-single-cpu-mpi: compiling with openmpi-2.0.1
17) gromacs-5.1.4-single-GPU: compiling with cuda-7.5
18) gurobi-7.0.0
19) hmmer-3.1b2
20) idba-1.1.3
21) lhapdf-6.2.1
22) libmsr-master-0.3.0
23) lm_sensors-3.4.0
24) mcl-14-137
25) mopac-2016
26) muscle-3.8.31
27) mxnet-0.10.1
28) opencv-2.4.11
29) orca-4.0.1
30) ovito-2.9.0
31) plumed-2.3.1
32) powercap-master
33) prodigal-2.6.3
34) protobuf-3.4.1
35) pygpu-0.6.8_python-2.7.5
36) python-2.7.5-nosage
37) python-3.5.2
38) qt-4.8.7
39) R-3.3.3_gnu
40) raplcap-master
41) rrdtool-1.4.3
42) samtools-1.5
43) schrodinger-2017
44) schrodinger-2017-3
45) singularity-2.3.2
46) snap-4.0
47) spark-2.2.0_hadoop_2.4
48) sqlite-3.21.0
49) stata-14-mp-erten
50) vsearch-2.4.4
New packages installed in Python-2.7.5
1) anvio-2.4.0
2) chainer-1.24.0
3) cv2-2.4.11
4) cython-0.25.2
5) dlib-19.7.0
6) imblearn-0.0
7) l1ls-0.2.1
8) lmdb-0.92
9) keras-2.0.5
10) mxnet-0.10.1
11) numpy-1.11.2
12) pygpu-0.6.8
13) pygraphviz-1.4rc1
14) scikit-image-0.13.0
15) scikit-learn-0.19.0
16) snap-4.0.0
17) theano-0.10.0dev1.dev-RELEASE
18) virtualenv-15.1.0
New packages installed in Python-3.5.2:
1) anvio-2.4.0
2) bottle-0.12.13
3) brainiak
4) CherryPy-8.9.1
5) Cython-0.25.2
6) Django-1.11.5
7) dlib-19.7.0
8) ete3-3.0.0b35
9) face_alignment-0.1.0
10) h5py-2.7.1
11) lxml-4.0.0
12) mistune-0.7.4
13) networkx-1.10rc2
14) opencv-python-3.3.0.10
15) Pillow-4.3.0
16) psutil-5.3.1
17) PyQt4_gpl_x11-4.12.1
18) pysam-0.11.1
19) pytorch-0.2.0
20) PyWavelets-0.5.2
21) PyYAML-3.12
22) qiime2-2017.8.0
23) requests-2.18.4
24) scikit-image-0.13.0
25) scikit-learn-0.19.0
26) sip-4.19.3
27) Theano-0.8.2
New packages installed in R-3.3.3:
1) devtools
2) magrittr
3) mallet
4) Rcpp
5) sqldf
6) tidytext
7) tidyverse
8) tm
9) rJava
10) stringi
11) wordVectors
The following is a list of software applications and compiler that will be installed soon.
1) Compiler (latest version): gnu-7.2.0-compilers (gcc, g++, fortran, support for c++17, GLIBCXX_3.4.24)
2) QT5: qt-5.10.0
3) MATLAB: matlab-2017b with license manager
And, researchers are welcome to install third-party software in their home directories with own accounts.
Happy New Year!
Wishing you great success in achieving your dreams and goals in 2018.
Best
Handan
--
Handan Liu, Ph.D.
Research Computing Associate, Information Technology Services
Northeastern University, 2 Ell Hall, 360 Huntington Ave, Boston, MA 02115